Uncomment the following code if you want to run the whole calculation. To do this calculation for all 895 CDS in Chlamydia trachomatis would take about 12 hours on the same machine. The pairwise alignment of one gene from Chlamydia trachomatis with all genes from Chlamydophila pneumoniae takes just under a minute on an Intel® Pentium 4, 2.0 GHz machine running Windows® XP.
Translation: 'MYRYSALELAKAVTLGELTATGVTQHFFHRIEEAEGQVGAFISLCKEQALEQAELIDKKRSRGEPLGKLAGVPVGIKDNIHVTGLKTTCASRVLENYQPPFDATVVERIKKEDGIILGKLNMDEFAMGSTTLYSAFHPTHNPWDLSRVPGGSSGGSAAAVSARFCPVALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFASSLDQIGPLANTVEDVALMMDVFSGRDPKDATSREFFRDSFMSKLSTEVPKVIGVPRTFLEGLRDDIRENFFSSLAIFEGEGTHLVDVELDILSHAVSIYYILASAEAATNLARFDGVRYGYRSPQAHTISQLYDLSRGEGFGKEVMRRILLGNYVLSAERQNVYYKKATAVRAKIVKAFRTAFEKCEILAMPVCSSPAFEIGEILDPVTLYLQDIYTVAMNLAYLPAIAVPSGFSKEGLPLGLQIIGQQGQDQQVCQVGYSFQEHAQIKQLFSKRYAKSVVLGGQS' The length of the product sequence is 491 residues. The fourth CDS record is for the gatA gene, which has product glutamyl-tRNA amidotransferase subunit A.
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